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seqmanii version 5.06  (DNASTAR)


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    Structured Review

    DNASTAR seqmanii version 5.06
    Seqmanii Version 5.06, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqmanii+version+5%2E06/seqman+software/pmc01287834-33-28-31
    Average 90 stars, based on 1 article reviews
    seqmanii version 5.06 - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Detection of a bla SHV Extended-Spectrum ?-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2× DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI). table ft1 table-wrap mode="anchored" t5 caption a7 Gene target Primer Sequence Product size (bp) bla CMY CMY-F 5′-CACACGTGGAATTTAGGAAAA-3′ 1,384 CMY-R 5′-CAAAATGCGCATGGGATT-3′ bla SHV SHV-F 5′-GGTTATTCTTATTTGTCGCTTCTT-3′ 1,233 SHV-R 5′-TACGTTACGCCACCTGGCTA-3′ bla TEM TEM-F 5′-TGGCACTTTTCGGGGAAAT-3′ 1,127 TEM-R 5′-ACGCTCAGTGGAACGAAAACT-3′ Open in a separate window Oligonucleotide primers used to amplify genes for sequencing Salmonella enterica serovar Newport SRC0307-213 was phenotypically negative for ESBL production by double-disk diffusion testing with ceftazidime and ceftazidime-clavulanate and also cefotaxime and cefotaxime-clavulanate (BD BBL Sensi-Disk; Becton Dickinson, Franklin Lakes, NJ) but was positive for bla CMY , bla TEM , and bla SHV genes by PCR.

    Article Title: Detection of a bla SHV Extended-Spectrum β-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2 DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI).

    Transmission Electron Microscopy:

    Article Title: Detection of a bla SHV Extended-Spectrum ?-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2× DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI). table ft1 table-wrap mode="anchored" t5 caption a7 Gene target Primer Sequence Product size (bp) bla CMY CMY-F 5′-CACACGTGGAATTTAGGAAAA-3′ 1,384 CMY-R 5′-CAAAATGCGCATGGGATT-3′ bla SHV SHV-F 5′-GGTTATTCTTATTTGTCGCTTCTT-3′ 1,233 SHV-R 5′-TACGTTACGCCACCTGGCTA-3′ bla TEM TEM-F 5′-TGGCACTTTTCGGGGAAAT-3′ 1,127 TEM-R 5′-ACGCTCAGTGGAACGAAAACT-3′ Open in a separate window Oligonucleotide primers used to amplify genes for sequencing Salmonella enterica serovar Newport SRC0307-213 was phenotypically negative for ESBL production by double-disk diffusion testing with ceftazidime and ceftazidime-clavulanate and also cefotaxime and cefotaxime-clavulanate (BD BBL Sensi-Disk; Becton Dickinson, Franklin Lakes, NJ) but was positive for bla CMY , bla TEM , and bla SHV genes by PCR.

    Article Title: Detection of a bla SHV Extended-Spectrum β-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2 DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI).

    Diffusion-based Assay:

    Article Title: Detection of a bla SHV Extended-Spectrum ?-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2× DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI). table ft1 table-wrap mode="anchored" t5 caption a7 Gene target Primer Sequence Product size (bp) bla CMY CMY-F 5′-CACACGTGGAATTTAGGAAAA-3′ 1,384 CMY-R 5′-CAAAATGCGCATGGGATT-3′ bla SHV SHV-F 5′-GGTTATTCTTATTTGTCGCTTCTT-3′ 1,233 SHV-R 5′-TACGTTACGCCACCTGGCTA-3′ bla TEM TEM-F 5′-TGGCACTTTTCGGGGAAAT-3′ 1,127 TEM-R 5′-ACGCTCAGTGGAACGAAAACT-3′ Open in a separate window Oligonucleotide primers used to amplify genes for sequencing Salmonella enterica serovar Newport SRC0307-213 was phenotypically negative for ESBL production by double-disk diffusion testing with ceftazidime and ceftazidime-clavulanate and also cefotaxime and cefotaxime-clavulanate (BD BBL Sensi-Disk; Becton Dickinson, Franklin Lakes, NJ) but was positive for bla CMY , bla TEM , and bla SHV genes by PCR.

    Article Title: Detection of a bla SHV Extended-Spectrum β-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2 DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI).

    Polymerase Chain Reaction:

    Article Title: Detection of a bla SHV Extended-Spectrum ?-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2× DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI). table ft1 table-wrap mode="anchored" t5 caption a7 Gene target Primer Sequence Product size (bp) bla CMY CMY-F 5′-CACACGTGGAATTTAGGAAAA-3′ 1,384 CMY-R 5′-CAAAATGCGCATGGGATT-3′ bla SHV SHV-F 5′-GGTTATTCTTATTTGTCGCTTCTT-3′ 1,233 SHV-R 5′-TACGTTACGCCACCTGGCTA-3′ bla TEM TEM-F 5′-TGGCACTTTTCGGGGAAAT-3′ 1,127 TEM-R 5′-ACGCTCAGTGGAACGAAAACT-3′ Open in a separate window Oligonucleotide primers used to amplify genes for sequencing Salmonella enterica serovar Newport SRC0307-213 was phenotypically negative for ESBL production by double-disk diffusion testing with ceftazidime and ceftazidime-clavulanate and also cefotaxime and cefotaxime-clavulanate (BD BBL Sensi-Disk; Becton Dickinson, Franklin Lakes, NJ) but was positive for bla CMY , bla TEM , and bla SHV genes by PCR.

    Article Title: Detection of a bla SHV Extended-Spectrum β-Lactamase in Salmonella enterica Serovar Newport MDR-AmpC
    Article Snippet: Clean amplicons were used to obtain 2 DNA sequence coverage in both directions using a CEQ2000 capillary sequencer (Beckman Coulter, Fullerton, CA), and sequence alignments were performed using SeqManII version 5.06 (DNAStar Inc., Madison, WI).



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    DNASTAR seqmanii version 5.06
    Seqmanii Version 5.06, supplied by DNASTAR, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/seqmanii+version+5%2E06/seqman+software/pmc01287834-33-28-31
    Average 90 stars, based on 1 article reviews
    seqmanii version 5.06 - by Bioz Stars, 2026-10
    90/100 stars
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